OntoPFAS

An organofluorine compound that has multiple fluorine atoms attached to an alkyl chain (but at least one of the carbon atoms in the chain is not fully fluorinated).

A chemical entity is a physical entity of interest in chemistry including molecular entities, parts thereof, and chemical substances.

• Functional group ^c
• Pfas ^c

A perfluorinated compound in which the carbon chain atoms are completely fluorinated.

Any organofluorine compound that is a oligomer or telomer synthesised by telomerization (a chain transfer reaction to produce an oligomer of a limited size). They are generally used in fire-fighting foams, leather protectants, food packaging and stain resistants.

• Formerly, this class was an experimental class and a subclass of "environmental feature". It is now aligned to BFO. The class was not obsoleted as the core semantics maintained their stability through its transition.

• A site which has its extent determined by the presence or influence of one or more components of an environmental system or the processes occurring therein.

• environment of activity ^op
• environment of location ^op
• environment of mobility ^op
• environment subject to ^op
• matrix of ^op

• activity in environment ^op
• location in environment ^op
• matrix ^op
• mobility in environment ^op
• valid in environment ^op

Entity that results from the interaction between and exposure_receptor and an exposure stressor during an exposure event.

• Dose ^c
• Biological response ^c
• Exposure intervention ^c

Any agent, entity, activity, or event that causally effects an organism and interacts with an exposure receptor during an exposure event.

• affects ^op
• exposure stimulus of ^op
• stimulated by ^op

• affected by ^op
• stimulates ^op

The individual attribute describing the structure of a living organism.

The total quantity or strength of a substance administered at one time.

Response of the organism.

• Disease ^c
• Symptom ^c
• Phenotype ^c

A disease is a pattern of abnormal functioning, or abnormal localization of normal functioning, and/or abnormal localization of constituents when compared to other members of that species.

A symptom is a perceived change in function, sensation, loss, disturbance or appearance reported by a patient indicative of a disease.

The act or fact of interfering so as to modify.

The assemblage of traits or outward appearance of an individual. It is the product of interactions between genes and between genes and the environment.

A material entity that is one or more organisms, viruses or viroids.

Anything with spatial extent, i.e. size, shape, or position. e.g. people, places, bowling balls, as well as abstract areas like cubes.

• contains measurement ^op
• location in environment ^op
• location in place ^op
• altitude ^dp
• latitude ^dp
• longitude ^dp

• environment of location ^op
• includes location ^op
• measured in ^op

• 1つのエージェントによって公開またはキュレートされ、1つ以上の形式でアクセスまたはダウンロードできるデータの集合。

• A collection of data, published or curated by a single source, and available for access or download in one or more representations.

• En samling af data, udgivet eller udvalgt og arrangeret af en enkelt kilde og som er til råde for adgang til eller download af i en eller flere repræsentationer.

• Kolekce dat poskytovaná či řízená jedním zdrojem, která je k dispozici pro přístup či stažení v jednom či více formátech.

• Raccolta di dati, pubblicati o curati da un'unica fonte, disponibili per l'accesso o il download in uno o più formati.

• Una colección de datos, publicados o conservados por una única fuente, y disponibles para ser accedidos o descargados en uno o más formatos.

• Une collection de données, publiée ou élaborée par une seule source, et disponible pour accès ou téléchargement dans un ou plusieurs formats.

• Μία συλλογή από δεδομένα, δημοσιευμένη ή επιμελημένη από μία και μόνο πηγή, διαθέσιμη δε προς πρόσβαση ή μεταφόρτωση σε μία ή περισσότερες μορφές.

• قائمة بيانات منشورة أو مجموعة من قبل مصدر ما و متاح الوصول إليها أو تحميلها

• En samling a data, udgivet eller udvalgt og arrangeret af en enkelt kilde og som der er adgang til i en eller flere repræsentationer.

• Cette classe représente le jeu de données publié par le fournisseur de données. Dans les cas où une distinction est nécessaire entre le jeu de donénes et son entrée dans le catalogue, la classe registre de données peut être utilisée pour ce dernier.

• Denne klasse beskriver det konceptuelle datasæt. En eller flere repræsentationer kan være tilgængelige med forskellige skematiske opsætninger, formater eller serialiseringer.

• Denne klasse repræsenterer det konkrete datasæt som det udgives af datasætleverandøren. I de tilfælde hvor det er nødvendigt at skelne mellem det konkrete datasæt og dets registrering i kataloget (fordi metadata såsom ændringsdato og vedligeholder er forskellige), så kan klassen katalogpost anvendes.

• Esta clase representa el conjunto de datos publicados. En los casos donde es necesario distinguir entre el conjunto de datos y su entrada en el catálogo de datos, se debe utilizar la clase 'registro del catálogo'.

• Questa classe descrive il dataset dal punto di vista concettuale. Possono essere disponibili una o più rappresentazioni, con diversi layout e formati schematici o serializzazioni.

• Questa classe rappresenta il dataset come pubblicato dall’editore. Nel caso in cui sia necessario operare una distinzione fra i metadati originali del dataset e il record dei metadati ad esso associato nel catalogo (ad esempio, per distinguere la data di modifica del dataset da quella del dataset nel catalogo) si può impiegare la classe catalog record.

• Tato třída reprezentuje datovou sadu tak, jak je publikována poskytovatelem dat. V případě potřeby rozlišení datové sady a jejího katalogizačního záznamu (jelikož metadata jako datum modifikace se mohou lišit) pro něj může být použita třída "katalogizační záznam".

• The notion of dataset in DCAT is broad and inclusive, with the intention of accommodating resource types arising from all communities. Data comes in many forms including numbers, text, pixels, imagery, sound and other multi-media, and potentially other types, any of which might be collected into a dataset.

• This class describes the conceptual dataset. One or more representations might be available, with differing schematic layouts and formats or serializations.

• This class represents the actual dataset as published by the dataset provider. In cases where a distinction between the actual dataset and its entry in the catalog is necessary (because metadata such as modification date and maintainer might differ), the catalog record class can be used for the latter.

• Η κλάση αυτή αναπαριστά το σύνολο δεδομένων αυτό καθ'εαυτό, όπως έχει δημοσιευθεί από τον εκδότη. Σε περιπτώσεις όπου είναι απαραίτητος ο διαχωρισμός μεταξύ του συνόλου δεδομένων και της καταγραφής αυτού στον κατάλογο (γιατί μεταδεδομένα όπως η ημερομηνία αλλαγής και ο συντηρητής μπορεί να διαφέρουν) η κλάση της καταγραφής καταλόγου μπορεί να χρησιμοποιηθεί για το τελευταίο.

• このクラスは、データセットの公開者が公開する実際のデータセットを表わします。カタログ内の実際のデータセットとそのエントリーとの区別が必要な場合（修正日と維持者などのメタデータが異なるかもしれないので）は、後者にcatalog recordというクラスを使用できます。

• source of ^op
• title ^dp

Activity of carrying out an (Observation) Procedure to estimate or calculate a value of a property of a FeatureOfInterest. Links to a Sensor to describe what made the Observation and how; links to an ObservableProperty to describe what the result is an estimate of, and to a FeatureOfInterest to detail what that property was associated with.

The activity of estimating the intensity of an Earthquake using the Mercalli intensity scale is an Observation as is measuring the moment magnitude, i.e., the energy released by said earthquake.

• matrix ^op
• measured in ^op
• measured PFAS ^op
• has simple result ^dp
• result time ^dp
• precision ^dp
• site ^dp
• unit ^dp

• contains measurement ^op
• matrix of ^op
• pfas measured in ^op

A city or town.

One of the continents (for example, Europe or Africa).

An organization such as a school, NGO, corporation, club, etc.

• activity in environment ^op
• maps link ^dp
• sector ^dp
• source text ^dp
• source type ^dp
• source url ^dp
• status ^dp
• type ^dp

• environment of activity ^op
• used by ^op

A person (alive, dead, undead, or fictional).

• homeLocation ^op
• birthDate ^dp
• gender ^dp
• handicap ^dp

• exposure stimulus of ^op
• home location of ^op

Physical place (city, region, country, continent).

• containsPlace ^op
• affected by ^op
• home location of ^op
• includes location ^op
• is contained in place ^op
• place subject to ^op
• address ^dp

• containsPlace ^op
• homeLocation ^op
• affects ^op
• is contained in place ^op
• location in place ^op
• valid in place ^op

• City ^c
• Continent ^c

Any offered product or service. For example: a pair of shoes; a concert ticket; the rental of a car; a haircut; or an episode of a TV show streamed online.

Functional group of the PFAS, responsible for the reactive part.

• functional group of ^op
• functional group name ^dp

PFCA with more than 7 atoms of carbon or PFSA with more than 5 atoms of carbon.

• Pfoa ^c
• Pfos ^c

A non-polymer is a substance composed of small molecules that do not form long chains or networks. These molecules are typically of uniform composition and have a relatively simple and well-defined structure.

Perfluoroalkyl acids (PFAAs) are a subclass of PFAS that have a fully fluorinated carbon chain (no hydrogen atoms attached to the carbon backbone) ending with a functional acid group — either a carboxylic acid (-COOH) or a sulfonic acid (-SO₃H) group.

• Perfluoroalkyl ^c
• Non polymer Pfas ^c

• Pfca ^c
• Pfsa ^c

Per- and poly- fluoroalkyl substance.

• functional group ^op
• mobility ^op
• pfas measured in ^op
• restricted by ^op
• stimulates ^op
• transported by ^op
• cas id ^dp
• concern level ^dp
• is ether ^dp
• is hydrophilic ^dp
• isomer ^dp
• number of carbons ^dp

• functional group of ^op
• measured PFAS ^op
• mobility of ^op
• restricts ^op
• stimulated by ^op

• Polyfluoroalkyl ^c
• Perfluoroalkyl ^c
• Long chain Pfas ^c
• Non polymer Pfas ^c
• Precursor ^c
• Polymer Pfas ^c
• Short chain Pfas ^c

Degree of mobility associated with the PFAS.

• mobility in environment ^op
• mobility of ^op
• mobility degree ^dp

• environment of mobility ^op
• mobility ^op

Precursor PFAS are compounds that can transform — through biological, chemical, or environmental processes — into perfluoroalkyl acids (PFAAs) such as PFOA or PFOS.

PFCAs are PFAAs that end with a carboxylic acid functional group (-COOH). Their general formula is CₙF₂ₙ₊₁COOH, where n is typically between 4 and 14.

PFOA is a specific PFCA with the formula C₇F₁₅COOH (eight carbon atoms).

• Long chain Pfas ^c
• Pfca ^c

PFOS is a specific PFSA with the formula C₈F₁₇SO₃H.

• Long chain Pfas ^c
• Pfsa ^c

PFSAs are PFAAs that end with a sulfonic acid functional group (-SO₃H). Their general formula is CₙF₂ₙ₊₁SO₃H.

A polymer is a substance composed of big molecules form long chains or networks.

PFCA with fewer than 8 atoms of carbon or PFSA with fewer than 6 atoms of carbon.

PFAS chains with a maximum of 3 atoms of carbon.

Fragile people who can suffer more from the exposure to PFAS.

Regulation about the presence of the PFAS in the environments.

• restricts ^op
• valid in environment ^op
• valid in place ^op
• limit ^dp

• environment subject to ^op
• place subject to ^op
• restricted by ^op

Presumptive PFAS observation.

The relation between a container and its physical content. A material entity a contains a material entity b if b is located in some cavity of a.

Inverse of contains.

A core relation that holds between a part and its whole.

A core relation that holds between a part and its whole.

A relation between two independent continuants, the target and the location, in which the target is entirely within the location.

A relation between two independent continuants, the target and the location, in which the target is entirely within the location.

Holds between p and c when p is a transport process or transporter activity and the outcome of this p is to move c from one location to another.

A is connected to b if and only if a and b are discrete structure, and there exists some connecting structure c, such that c connects a and b.

x surrounded_by y if and only if (1) x is adjacent to y and for every region r that is adjacent to x, r overlaps y (2) the shared boundary between x and y occupies the majority of the outermost boundary of x.

inverse of surrounded by.

A relationship between an exposure event or process and any agent, stimulus, activity, or event that causally effects an organism and interacts with an exposure receptor during an exposure event.

x transformation of y if x is the immediate transformation of y, or is linked to y through a chain of transformation relationships

• Note that this definition doesn't quite distinguish the output of a transformation process from a production process, which is related to the identity/granularity issue.

• a produces b if some process that occurs_in a has_output b, where a and b are material entities. Examples: hybridoma cell line produces monoclonal antibody reagent; chondroblast produces avascular GAG-rich matrix.

a produced_by b iff some process that occurs_in b has_output a.

• Genetic variations can span any level of granularity from a full genome or genotype to an individual gene or sequence alteration. These variations can be represented at the physical level (DNA/RNA macromolecules or their parts, as in the ChEBI ontology and Molecular Sequence Ontology) or at the abstract level (generically dependent continuant sequence features that are carried by these macromolecules, as in the Sequence Ontology and Genotype Ontology). The causal relations in this hierarchy can be used in linking either physical or abstract genetic variations to phenotypes or diseases they cause or contribute to. Environmental exposures include those imposed by natural environments, experimentally applied conditions, or clinical interventions.

• A relationship between an entity (e.g. a genotype, genetic variation, chemical, or environmental exposure) and a condition (a phenotype or disease), where the entity has some causal or contributing role that influences the condition.

A relationship between a condition (a phenotype or disease) and an entity (e.g. environment) or condition (phenotype or disease) which could be an existing condition or an event, where the entity or second condition has a causal role for the condition being described.

• The described resource may be derived from the related resource in whole or in part. Recommended best practice is to identify the related resource by means of a string conforming to a formal identification system.

• A related resource from which the described resource is derived.

A is directly connected to B iff there exists a path direclty between A and B.

A transitive temporal relation in which an entity mainstains identity from one state to another.

Usage is the beginning of utilizing an entity by an activity. Before usage, the activity had not begun to utilize this entity and could not have been affected by the entity.

The basic containment relation between a place and another that it contains.

A contact location for a person's residence.

Relationship describing the environment surrounding an activity.

Relation between a PFAS and people exposed to them.

Relation between a PFAS and people exposed to them.

A relation between a location and a PFAS measurement.

Relationship describing the environment surrounding an activity.

Relation to indicate in which environment the location is present.

Relation to express the level of mobility within a certain environment.

Relation identifying the validity of a guideline in an environment.

A relationship between an exposure event or process and any agent, stimulus, activity, or event that causally effects an organism and interacts with an exposure receptor during an exposure event.

Property to express the functional group of a PFAS.

Property to express the functional group of a PFAS.

A contact location for a person's residence.

A relation indicating the geographical presence of a location within an area.

Inverse of contains place.

Relation to indicate in which environment the location is present.

Inverse of contains location.

Relation to indicate the PFAS matrix of an organization or measurement.

Relation to indicate the PFAS matrix of an organization or measurement.

A relation between a container and measurement datum that specifies the actual amount of material in the container.

Relation to indicate the detected PFAS.

Relation identifying the level of mobility of a PFAS.

Relation to express the level of mobility within a certain environment.

Relation identifying the level of mobility of a PFAS.

Relation to indicate the detected PFAS.

Relation identifying the validity of a guideline in a continent.

Relation identifying the restriction of a guideline to a PFAS.

Relation identifying the restriction of a guideline to a PFAS.

Inverse of source.

Relation indicating what is the exposed PFAS.

Relation indicating what is the exposed PFAS.

Holds between p and c when p is a transport process or transporter activity and the outcome of this p is to move c from one location to another.

Inverse of used.

Relation identifying the validity of a guideline in an environment.

Relation identifying the validity of a guideline in a place.

The simple value of an Observation or Actuation.

For instance, the values 23 or true.

• http://www.w3.org/ns/sosa/Actuation
• Observation ^c

The result time is the instant of time when the Observation, Actuation or Sampling activity was completed.

• file:///home/depierro/Desktop/INRAe/Ontology/Observation
• http://www.w3.org/ns/sosa/Actuation
• http://www.w3.org/ns/sosa/Sampling

Physical address of the item.

Date of birth.

Gender of something, typically a Person, but possibly also fictional characters, animals, etc. While https://schema.org/Male and https://schema.org/Female may be used, text strings are also acceptable for people who are not a binary gender. The gender property can also be used in an extended sense to cover e.g. the gender of sports teams. As with the gender of individuals, we do not try to enumerate all possibilities. A mixed-gender SportsTeam can be indicated with a text value of "Mixed".

Name of the organization.

Altitude of a geographical point.

CAS Registry Number of the chemical substance.

Level of concern associated with a substance (low, medium, high).

Name of the functional group.

Indication about the presence of an handicap.

Capability of a PFAS to move into the air.

Capability of a PFAS to move into the water.

Isomer of a PFAS.

Maximum amount of PFAS in an environment.

Google Maps link of an organisation.

Degree of mobility.

Number of atoms of carbons in the molecule.

Ph level of a substance.

Value indicating possible ranges like "<" or ">".

Sector of an organisation.

Site associated with the location of an observation.

Source of the text of an organisation.

Source of the type of the organisation.

URL source of an organisation.

Current status of the organisation.

Type of an organisation.

Scale of a value, e.g. 1000 for kilo or 0.001 for mili.

Latitude of a geographical point.

Longitude of a geographical point.

Technique for data collection.

• The described resource may be derived from the related resource in whole or in part. Recommended best practice is to identify the related resource by means of a string conforming to a formal identification system.

• A related resource from which the described resource is derived.